PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g010250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 677aa    MW: 74472.3 Da    PI: 5.3207
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g010250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.8e-10159214560
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l 
  Csa17g010250.1 159 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLA 214
                     9*****************************************99988877666555 PP

2bZIP_130.57.8e-10486541560
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l 
  Csa17g010250.1 486 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLA 541
                     9*****************************************99988877666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-15155219IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829157220IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.36E-10159210No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-9159214No hitNo description
PfamPF001702.8E-8159213IPR004827Basic-leucine zipper domain
CDDcd147032.26E-21160209No hitNo description
SMARTSM003381.2E-15482546IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829484547IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-9486541No hitNo description
PfamPF001702.8E-8486540IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.36E-10486537No hitNo description
CDDcd147032.26E-21487536No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MEKSSDSKLS DPIPNAASSD SKLSDPIPNA ADPTPPSSFH RRSRSDDMSM FMFMDPLSSG  60
APPSSDDLPS DDDLFSSFID VDSLTSNPNP FPNQSLSSNS ASGANPNPPP PQQSSSSRPR  120
HRHSNSVDAG CAMYAGEIMD AKKAMPPEKL SELWNIDPKR AKRILANRQS AARSKERKAR  180
YIQELERKVQ SLQTEATTLS AQLTLYQRDT NGLANENTEL KLRLQAMEQQ AQLRNALNEA  240
LRKEVERMKM ETGEISGNSD SFDMGMQQIQ YSSSTFMAIP PYHHGSMNGQ DMQQMHTSFN  300
NPMEMSNSQS VSDFLQNGRL QGLEISSNSS SLVKSEGPSL SANSKFSDPI PLPNNPNADP  360
TPPSSFHRRS RSDDMSMFMF MDPLSSGAPP SSDDLPSDDD LFSSFIDVDS LTSNPNPFPN  420
QSLSSNSASG ANPNPPPPQQ SSSSRPRHRH SNSVDAGCAM YAGEIMDAKK AMPPEKLSEL  480
WNIDPKRAKR ILANRQSAAR SKERKARYIQ ELERKVQSLQ TEATTLSAQL TLYQRDTNGL  540
ANENTELKLR LQAMEQQAQL RNALNEALRK EVERMKMETG EISGNSDSFD MGMQQIQYSS  600
STFMAIPPYH HGSMNGQDMQ QMHTSFNNPM EMSNSQSVSD FLQNGRLQGL EISSNSSSLV  660
KSEGPSLSAS ESSSAY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198520.0AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAY0624740.0AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBankBT0001020.0BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475437.10.0PREDICTED: transcription factor RF2b-like
SwissprotQ6S4P43e-80RF2B_ORYSJ; Transcription factor RF2b
TrEMBLR0IIC01e-177R0IIC0_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0001_6231e-163(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-134basic leucine-zipper 52